circRNA basic information
circBase ID: hsa_circ_0070354
Name: hsa_circ_PTPN13
Synonym: circRNA 0070354
Host Gene: PTPN13
Genomic location(hg19): chr4:87593517-87610343:+
Genomic location(hg38): chr4:86672364-86689190:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small cell lung cancer / NSCLC
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; paracancerous tissues; serum

Cell lines:

A549; H1299; HUT226; SPCA; HBE1

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: PTPN13, ErbB, MAPK
Associated microRNA: miR-1257, miR-1272, miR-1305, miR-922, miR-4322, miR-4632-5p, miR-6879-5p
Biological function: biomarker for diagnosis and prognosis; associated with advanced stage and poor differentiation
Molecular mechanism: predicted ceRNA (miRNA sponge) mechanism based on cytoplasmic localization and bioinformatics prediction; not experimentally confirmed
Biological pathway or process:

MAPK (other); ERK (other); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Survival Analysis; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Serum hsa_circ_0070354 shows diagnostic value for NSCLC (AUC 0.660) and high expression is an independent predictor of poor prognosis (HR = 5.087, p < 0.001).

Description:

hsa_circ_0070354 is up-regulated in NSCLC tissues, cell lines, and patient serum, and mainly localizes to the cytoplasm. It serves as a serum biomarker with moderate diagnostic performance (AUC 0.660) and high expression predicts poor overall survival, acting as an independent prognostic factor; its ceRNA network and MAPK/ErbB-related pathways were bioinformatically predicted but not experimentally confirmed.

Confidence score:

0.7378

Other information
Title:

Comprehensive Assessment of Serum hsa_circ_0070354 as a Novel Diagnostic and Predictive Biomarker in Non-small Cell Lung Cancer.

Journal: Frontiers in genetics
Published: 2021
PubMed ID: 35096013
Study type:

combined biological and clinical study

Data availability: PRJNA 781220
Code availability: -