circRNA basic information
circBase ID: hsa_circ_0003641
Name: hsa_circ_ATM
Synonym: circATM / circRNA_28305
Host Gene: ATM
Genomic location(hg19): chr11:108098321-108106561:+
Genomic location(hg38): chr11:108227594-108235834:+
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; paired paracancerous tissues

Cell lines:

HFE-145; GES-1; BGC-823; SGC7901; AGS; MKN45; HEK293T; MKN28; HGC27

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: PARP1, beta-catenin, TCF4
Associated microRNA: -
Biological function: Inhibits GC cell proliferation and migration; induces G2/M cell cycle arrest; suppresses tumor growth in vivo.
Molecular mechanism: circATM binds PARP1 (ZFⅡ-Ⅲ) to block recruitment to DNA damage sites and promote ubiquitin-proteasome degradation of PARP1; disrupts PARP1/beta-catenin/TCF4 complex, suppressing Wnt/beta-catenin transcriptional activity.
Biological pathway or process:

Wnt/beta-catenin (inhibits); cell cycle (inhibits); proliferation (inhibits); migration (inhibits); ubiquitination (promotes)

Detected method:
Q
S
Validation methods:

circRNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; RIP (RNA Immunoprecipitation); Co-IP; Luciferase Reporter Assay; Transfection; EdU Staining; Colony Formation Assay; Wound Healing Assay; Cell Cycle Assay; In Vivo Animal Model; Western Blot; Bioinformatics Analysis

Clinical significance:

circATM levels are negatively related to tumor aggressiveness (more lymph node metastases and poorer tumor differentiation) and proposed as a diagnostic/therapeutic biomarker for GC.

Description:

circATM is down-regulated in gastric cancer and functions as a tumor suppressor. It binds PARP1 (ZFⅡ-Ⅲ), promotes PARP1 ubiquitin-proteasome degradation and disrupts the PARP1/beta-catenin/TCF4 transcriptional complex, thereby suppressing Wnt/beta-catenin signaling and inducing G2/M cell cycle arrest, reducing proliferation and migration in vitro and tumor growth in vivo.

Confidence score:

0.8079

Other information
Title:

Circular RNA circATM binds PARP1 to suppress Wnt/beta-catenin signaling and induce cell cycle arrest in gastric cancer cells.

Journal: Journal of advanced research
Published: 2026
PubMed ID: 40288674
Study type:

combined biological and clinical study

Data availability: Available from the corresponding authors upon reasonable request; Supplementary data at https://doi.org/10.1016/j.jare.2025.04.033
Code availability: -