circRNA basic information
circBase ID: hsa_circ_0062019
Name: hsa_circ_SLC19A1
Synonym: circ_0062019
Host Gene: SLC19A1
Genomic location(hg19): chr21:46934628-46952062:-
Genomic location(hg38): chr21:45514714-45532148:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008315
MONDO name: prostate cancer
Disease details: Prostate cancer / PCa
Disease DO ID:
10283
Disease MeSH ID:
D011471
Disease NCIt ID:
C7378
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

prostate cancer tissues; paracancerous tissues; prostate puncture tissues; BPH tissues

Cell lines:

22RV1; DU145; Lncap; PC3; HPEpic

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: SLC19A1, CSF1, RAB3IL1, TGM2, GPR68, BIBD11, SIPR4, TGFB1I1, NUDT8, GPT2, NPTX2
Associated microRNA: miR-5008-5p
Biological function: Potential diagnostic biomarker for prostate cancer; positively correlated with age, PSA level, Gleason score, and aggressive prostate cancer; may affect prostate cancer progression through SLC19A1-related folate regulation.
Molecular mechanism: Predicted ceRNA mechanism involving circ_0062019-miR-5008-5p-SLC19A1; possible regulation of folate level through SLC19A1.
Biological pathway or process:

ceRNA regulation (other); other pathway/process (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

AUC of circ_0062019 was 0.828; combined detection with circ_0057558 and PSA improved diagnostic performance for distinguishing PCa from BPH; circ_0062019 was positively correlated with PSA level, Gleason score, and aggressive cancer.

Description:

circ_0062019 was up-regulated in prostate cancer cell lines and tissues and was validated by qRT-PCR. The study proposes circ_0062019 as a diagnostic biomarker and suggests a predicted circ_0062019/miR-5008-5p/SLC19A1 axis that may influence prostate cancer progression through folate-related biology.

Confidence score:

0.5047

Other information
Title:

Circular RNA Expression Profiling Identifies Prostate Cancer- Specific circRNAs in Prostate Cancer.

Journal: Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology
Published: 2018
PubMed ID: 30396163
Study type:

combined biological and clinical study

Data availability: www.karger.com/10.1159/000494870/
Code availability: -