circRNA basic information
circBase ID: hsa_circ_0000993
Name: hsa_circ_ATL2
Synonym: hsa circ 0000993
Host Gene: ATL2
Genomic location(hg19): chr2:38545676-38546161:-
Genomic location(hg38): chr2:38318534-38319019:-
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent normal tissues

Cell lines:

SGC-7901; BGC-823

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: ATL2
Associated microRNA: miR-214-5p
Biological function: Inhibits migration, invasion, proliferation, and metastasis of gastric cancer cells.
Molecular mechanism: hsa circ 0000993 functions as a miRNA sponge by competitively binding miR-214-5p, thereby inhibiting migration, invasion and proliferation of gastric cancer cells; it does not influence ATL2 or miR-214-5p expression levels.
Biological pathway or process:

migration (inhibits); invasion (inhibits); proliferation (inhibits); metastasis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Microarray; RT-qPCR; FISH / smFISH; Transfection; Wound Healing Assay; Transwell Assay; MTT; Luciferase Reporter Assay; Bioinformatics Analysis

Clinical significance:

-

Description:

hsa_circ_0000993 is a human circRNA derived from ATL2 and is reduced in the highly aggressive gastric cancer cell line BGC-823 compared with SGC-7901. Its overexpression suppresses gastric cancer cell migration, invasion and proliferation, likely by competitively binding miR-214-5p rather than by regulating ATL2 or miR-214-5p expression levels.

Confidence score:

0.7519

Other information
Title:

Circular RNA hsa_circ_0000993 inhibits metastasis of gastric cancer cells.

Journal: Epigenomics
Published: 2018
PubMed ID: 30215537
Study type:

combined biological and bioinformatics study

Data availability: GSE78092; GSE78091; TCGA; www.futuremedicine.com/doi/full/ 10.2217/epi-2017-0173
Code availability: -