circRNA basic information
circBase ID: hsa_circ_0040039
Name: hsa_circ_SNTB2
Synonym: circ_0040039
Host Gene: SNTB2
Genomic location(hg19): chr16:69279504-69318147:+
Genomic location(hg38): chr16:69245601-69284244:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0011385
MONDO name: intervertebral disk degenerative disorder
Disease details: intervertebral disc degeneration
Disease DO ID:
90
Disease MeSH ID:
D055959
Disease NCIt ID:
C26983
Disease ICD11 ID:
-
Disease OMIM ID:
603932
Species: Human
Species details: Homo sapiens
Tissue specimen:

human lumbar NP tissues / NP tissues

Cell lines:

HEK-293 T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: FAF1, TP73, AGO2
Associated microRNA: miR-345-3p
Biological function: Promotes TNF-alpha-induced NPCs PAoptosis (apoptosis/pyroptosis), inflammatory response, growth inhibition, and ECM degradation; more strongly promotes apoptosis than circ_0004354.
Molecular mechanism: ceRNA mechanism: competitively adsorbs miR-345-3p in RISC (AGO2-associated), thereby positively regulating miR-345-3p target genes FAF1/TP73 and activating CASP3-GSDME-mediated PAoptosis.
Biological pathway or process:

apoptosis (promotes); pyroptosis (promotes); inflammation (promotes); proliferation (inhibits); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; FISH / smFISH; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Annexin V/PI Flow Cytometry; Western Blot; ELISA; Clinical Sample Validation

Clinical significance:

Expression was correlated with the severity of IVDD.

Description:

circ_0040039 is up-regulated in IVDD NP tissues and promotes TNF-alpha-induced NPC PAoptosis, inflammatory response, growth inhibition, and ECM degradation. Mechanistically, it acts as a ceRNA by binding miR-345-3p (AGO2/RISC-associated) to increase FAF1 and TP73, with a stronger pro-apoptotic effect relative to circ_0004354.

Confidence score:

0.8344

Other information
Title:

Circ_0004354 might compete with circ_0040039 to induce NPCs death and inflammatory response by targeting miR-345-3p-FAF1/TP73 axis in intervertebral disc degeneration.

Journal: Oxidative medicine and cellular longevity
Published: 2022
PubMed ID: 35039758
Study type:

combined biological and clinical study

Data availability: GSE67566; GSE63492; GSE116726; GSE56081
Code availability: -