circRNA basic information
circBase ID: hsa_circ_0001649
Name: hsa_circ_SHPRH
Synonym: -
Host Gene: SHPRH
Genomic location(hg19): chr6:146209155-146216113:-
Genomic location(hg38): chr6:145888019-145894977:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissue samples; paired paracancerous histological normal tissues (PCHNTS); peripheral blood; serum samples

Cell lines:

HCT116; H116

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: Potential diagnostic biomarker for colorectal cancer; negatively correlated with CRC pathological differentiation.
Molecular mechanism: Unknown; the study measured differential expression and diagnostic value, but did not determine how hsa_circ_0001649 regulates colorectal cancer initiation or progression.
Biological pathway or process:

not specified

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; Clinical Sample Validation; ROC Analysis

Clinical significance:

Down-regulated hsa_circ_0001649 showed negative correlation with CRC pathological differentiation and potential diagnostic value, with ROC AUC 0.857, sensitivity 0.828, and specificity 0.781.

Description:

This study reports that hsa_circ_0001649 is down-regulated in colorectal cancer tissues, HCT116 cells, and patient serum. Its expression is negatively correlated with pathological differentiation and shows potential diagnostic value for CRC, but the molecular mechanism was not determined.

Confidence score:

0.5958

Other information
Title:

Hsa_circ_0001649: A circular RNA and potential novel biomarker for colorectal cancer.

Journal: Biochemical and biophysical research communications
Published: 2018
PubMed ID: 29421663
Study type:

combined biological and clinical study

Data availability: -
Code availability: -