circRNA basic information
circBase ID: hsa_circ_0036412
Name: hsa_circ_ETFA
Synonym: -
Host Gene: ETFA
Genomic location(hg19): chr15:76584959-76588078:-
Genomic location(hg38): chr15:76292618-76295737:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent tissues

Cell lines:

THLE-2; HuH-7; Hep 3B; Li-7; 293 T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: GLI2, ELAVL1, PRDM1, ETFA promoter
Associated microRNA: miR-579-3p
Biological function: promotes proliferation; inhibits G2/M phase arrest (cell cycle arrest)
Molecular mechanism: PRDM1 transcriptionally activates circ_0036412; circ_0036412 acts as a ceRNA to sponge miR-579-3p and up-regulate GLI2; circ_0036412 recruits ELAVL1 to stabilize GLI2; activates Hedgehog signaling
Biological pathway or process:

Hedgehog (promotes); proliferation (promotes); cell cycle (promotes); ceRNA regulation (promotes); mRNA stability (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; divergent primers PCR; CCK8; EdU Staining; TUNEL; Cell Cycle Assay; FISH / smFISH; Luciferase Reporter Assay; ChIP / ChIP-seq; RIP (RNA Immunoprecipitation); RNA Pull-Down; Western Blot; Transfection; In Vivo Animal Model; H&E Staining; Bioinformatics Analysis

Clinical significance:

-

Description:

circ_0036412 is up-regulated in HCC cell lines and promotes proliferation while preventing G2/M cell-cycle arrest. Mechanistically, it activates Hedgehog signaling by increasing GLI2 through miR-579-3p sponging and by recruiting ELAVL1 to stabilize GLI2 mRNA; PRDM1 transcriptionally activates circ_0036412 via the ETFA promoter.

Confidence score:

0.808

Other information
Title:

Circ_0036412 affects the proliferation and cell cycle of hepatocellular carcinoma via hedgehog signaling pathway.

Journal: Journal of translational medicine
Published: 2022
PubMed ID: 35382824
Study type:

combined biological and bioinformatics study

Data availability: GSE113510
Code availability: -