circRNA basic information
circBase ID: -
Name: -
Synonym: hsa_circRNA_104980
Host Gene: -
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009807
MONDO name: osteosarcoma
Disease details: osteosarcoma / OS
Disease DO ID:
3347
Disease MeSH ID:
D012516
Disease NCIt ID:
C9145
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

fresh frozen tissue samples; tumor tissues; paired normal tissues; osteosarcoma tissues

Cell lines:

hFOB1.19; U2OS; MG63; HOS; 143B; ZOS; ZOS-M; U2OS/MTX300

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: NFATC2IP
Associated microRNA: hsa-miR-1298-3p, hsa-miR-660-3p
Biological function: May function as a tumor suppressor gene in osteosarcoma and may be involved in osteosarcoma initiation and progression.
Molecular mechanism: Predicted ceRNA mechanism: hsa_circRNA_104980 may interact with hsa-miR-1298-3p and hsa-miR-660-3p and was correlated with the predicted ceRNA NFATC2IP; bioinformatics analyses associated it with tight junction, IFN-beta enhancer, p38, asparagine N-linked glycosylation and cytokine signaling in immune system pathways.
Biological pathway or process:

ceRNA regulation (other); immune regulation (other); other pathway/process (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

May serve as a biomarker of osteosarcoma diagnosis and treatment or a potential diagnostic biomarker/therapeutic target.

Description:

hsa_circRNA_104980 is down-regulated in osteosarcoma cell lines and tissues. The study suggests it may act as a tumor suppressor circRNA and predicts a circRNA/miRNA/mRNA regulatory network involving hsa-miR-1298-3p, hsa-miR-660-3p and the correlated downstream partner NFATC2IP. Bioinformatics analyses associated it with tight junction and immune/cytokine-related pathways, but the authors note that further validation is needed.

Confidence score:

0.4032

Other information
Title:

Microarray Expression Profile and Functional Analysis of Circular RNAs in Osteosarcoma.

Journal: Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology
Published: 2017
PubMed ID: 28957794
Study type:

combined biological, clinical and bioinformatics study

Data availability: GSE96964
Code availability: -