circRNA basic information
circBase ID: hsa_circ_0039857
Name: hsa_circ_RANBP10
Synonym: circ_0039857
Host Gene: RANBP10
Genomic location(hg19): chr16:67761229-67771938:-
Genomic location(hg38): chr16:67727326-67738035:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues / tumor tissues

Cell lines:

NCM460; HCT116; SW620; SW480; SW837; SW48; RKO

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: RAB32
Associated microRNA: miR-338-3p
Biological function: Promotes CRC cell proliferation and inhibits apoptosis (tumor-promoting factor); knockdown inhibits proliferation and promotes apoptosis.
Molecular mechanism: Acts as a miRNA sponge (ceRNA) for miR-338-3p to upregulate RAB32.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Bioinformatics Analysis; Luciferase Reporter Assay; RNA Pull-Down; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Western Blot; Clinical Sample Validation; ROC Analysis

Clinical significance:

ROC curve analysis indicated circ_0039857 has diagnostic value for CRC (AUC = 0.9513).

Description:

circ_0039857 is up-regulated in colorectal cancer tissues and cell lines and shows diagnostic potential by ROC analysis. Functionally, circ_0039857 promotes CRC malignant progression by enhancing proliferation and inhibiting apoptosis. Mechanistically, it acts as a ceRNA that sponges miR-338-3p to increase RAB32 expression.

Confidence score:

0.8287

Other information
Title:

The hsa_circ_0039857/miR-338-3p/RAB32 axis promotes the malignant progression of colorectal cancer.

Journal: BMC gastroenterology
Published: 2022
PubMed ID: 36539702
Study type:

combined biological and clinical study

Data availability: The online version contains supplementary material available at 10.1186/s12876-022-02622-1.
Code availability: -