circRNA basic information
circBase ID: hsa_circ_0005615
Name: hsa_circ_NFATC3
Synonym: circ5615
Host Gene: NFATC3
Genomic location(hg19): chr16:68155889-68157024:+
Genomic location(hg38): chr16:68121986-68123121:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; adjacent nontumorous tissues; tumorous tissues; tumor tissue; nontumorous tissue

Cell lines:

HCT 116; LoVo; HT-29; SW480; NCM460; HEK-293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: AGO2, TNKS, beta-catenin, CCND1, AXIN2
Associated microRNA: miR-149-5p, miR-331-3p
Biological function: Promotes colorectal cancer progression by enhancing proliferation, cell cycle progression, migration and invasion; promotes tumor growth in vivo.
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-149-5p, relieving repression of TNKS, thereby activating Wnt/beta-catenin signaling (AXIN2 degradation, increased nuclear beta-catenin and CCND1).
Biological pathway or process:

proliferation (promotes); cell cycle (promotes); migration (promotes); invasion (promotes); Wnt/beta-catenin (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; ISH (In Situ Hybridization); RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; RNA-seq; Bioinformatics Analysis; Transfection; EdU Staining; Colony Formation Assay; Cell Cycle Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; IF (Immunofluorescence); IHC (Immunohistochemistry); In Vivo Animal Model; Clinical Sample Validation; Cohort Study; Survival Analysis

Clinical significance:

High circ5615 expression is correlated with higher T stage and is an independent prognostic factor associated with shorter overall survival in CRC patients.

Description:

circ5615 (hsa_circ_0005615), derived from NFATC3, is upregulated in colorectal cancer and mainly localizes to the cytoplasm. It promotes CRC proliferation/cell-cycle progression and tumor growth by sponging miR-149-5p to de-repress TNKS, thereby activating the Wnt/beta-catenin pathway (e.g., increased nuclear beta-catenin and CCND1). High circ5615 expression correlates with higher T stage and poor overall survival.

Confidence score:

0.8991

Other information
Title:

circ5615 functions as a ceRNA to promote colorectal cancer progression by upregulating TNKS.

Journal: Cell death & disease
Published: 2020
PubMed ID: 32393760
Study type:

combined biological and clinical study

Data availability: GSE142837
Code availability: -