circRNA basic information
circBase ID: -
Name: hsa_circ_SLC8A1
Synonym: circSLC8A1
Host Gene: -
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005021
MONDO name: dilated cardiomyopathy
Disease details: dilated cardiomyopathy / DCM
Disease DO ID:
12930
Disease MeSH ID:
D002311
Disease NCIt ID:
C84673
Disease ICD11 ID:
1916294688
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

human failing myocardium; non-failing control hearts; explant hearts; human heart biopsies

Cell lines:

hiPSC-CMs

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: ribosomes, Argonaute 2 protein
Associated microRNA: -
Biological function: Candidate association with ribosomes and Argonaute 2 suggests a possible role in translation regulation; disease-context functional effects were not directly tested.
Molecular mechanism: Host gene-independent expression in DCM; candidate association with ribosomes and Argonaute 2 protein
Biological pathway or process:

other pathway/process (other)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation

Clinical significance:

Significant change in circRNA abundance in DCM patients compared with non-failing controls

Description:

circSLC8A1 was significantly increased relative to its host gene expression in DCM heart samples compared with non-failing controls. Homolog-based RIP analyses also suggested association with ribosomes and Argonaute 2, implying a possible role in translation regulation.

Confidence score:

0.2995

Other information
Title:

Identification of circular RNAs with host gene-independent expression in human model systems for cardiac differentiation and disease.

Journal: Journal of molecular and cellular cardiology
Published: 2017
PubMed ID: 28676412
Study type:

combined biological and clinical study

Data availability: SRP110564; SFile3_Diff_edgeR_circRNA.xlsx; SFile4_significant_circTest_candidates; SFile5_Venn_diagram_table_Figure4.xlsx
Code availability: -