circRNA basic information
circBase ID: hsa_circ_0003570
Name: hsa_circ_FAM53B
Synonym: -
Host Gene: FAM53B
Genomic location(hg19): chr10:126370175-126384781:-
Genomic location(hg38): chr10:124681606-124696212:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent non-tumorous tissues; liver biopsy samples; chronic hepatitis tissues; liver cirrhosis tissues

Cell lines:

HepG2; SMMC-7721; MHCC97L; MHCC97H; HCCLM3; L02

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: hsa_circ_0003570 was decreased in HCC cell lines and tissues, gradually decreased from CH to LC to HCC, associated with HCC clinicopathological characteristics, and suggested to potentially play roles during HCC invasion and metastasis.
Molecular mechanism: No direct molecular mechanism was experimentally demonstrated; the circRNA is transcribed from FAM53B, whose protein is described as modulating cell proliferation and regulating beta-catenin-dependent Wnt signaling.
Biological pathway or process:

invasion (inhibits); metastasis (inhibits); proliferation (other); Wnt/beta-catenin (other)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; Microarray; Clinical Sample Validation; ROC Analysis

Clinical significance:

hsa_circ_0003570 expression levels were associated with HCC clinicopathological characteristics including tumor diameter, differentiation, microvascular invasion, BCLC stage, TNM stage, and serum AFP levels; ROC analysis suggested poor performance for differentiating HCC from LC and CH but relatively good performance for differentiating LC from CH.

Description:

This study showed that hsa_circ_0003570 is significantly down-regulated in HCC cell lines and HCC tissues, with expression decreasing across CH, LC, and HCC. Its reduced expression is associated with clinicopathological features of HCC and may have clinical relevance as a biomarker, especially for distinguishing LC from CH, although mechanistic function was not experimentally validated.

Confidence score:

0.63

Other information
Title:

Decreased expression of hsa_circ_0003570 in hepatocellular carcinoma and its clinical significance.

Journal: Journal of clinical laboratory analysis
Published: 2018
PubMed ID: 28493512
Study type:

combined biological and clinical study

Data availability: GSE94508
Code availability: -