circRNA basic information
circBase ID: hsa_circ_0029696
Name: hsa_circ_SKA3
Synonym: circSKA3
Host Gene: SKA3
Genomic location(hg19): chr13:21735928-21746820:-
Genomic location(hg38): chr13:21161789-21172681:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007959
MONDO name: medulloblastoma
Disease details: Medulloblastoma
Disease DO ID:
0050902, 0060104
Disease MeSH ID:
D008527
Disease NCIt ID:
C3222
Disease ICD11 ID:
290815825
Disease OMIM ID:
155255
Species: Human
Species details: Homo sapiens
Tissue specimen:

MB tissues; adjacent normal tissues; xenograft tumor

Cell lines:

DAOY; ONS-76

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: FOXM1
Associated microRNA: miR-383-5p
Biological function: promotes cell proliferation, migration, and invasion; inhibits apoptosis; promotes xenograft tumor growth
Molecular mechanism: ceRNA mechanism: circSKA3 sponges miR-383-5p to upregulate FOXM1
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits); cell cycle (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; Luciferase Reporter Assay; Transfection; MTT; Annexin V/PI Flow Cytometry; Cell Cycle Assay; Transwell Assay; Western Blot; In Vivo Animal Model; Clinical Sample Validation

Clinical significance:

-

Description:

circSKA3 is up-regulated in medulloblastoma and mainly localized in the cytoplasm. It promotes MB cell proliferation, migration and invasion while inhibiting apoptosis by sponging miR-383-5p and thereby increasing FOXM1 expression, and its knockdown suppresses DAOY xenograft growth in vivo.

Confidence score:

0.7635

Other information
Title:

CircSKA3 Modulates FOXM1 to Facilitate Cell Proliferation, Migration, and Invasion While Confine Apoptosis in Medulloblastoma via miR-383-5p.

Journal: Cancer management and research
Published: 2020
PubMed ID: 33408514
Study type:

combined biological and clinical study

Data availability: -
Code availability: -