circRNA basic information
circBase ID: hsa_circ_0004099
Name: hsa_circ_DENND5A
Synonym: -
Host Gene: DENND5A
Genomic location(hg19): chr11:9225206-9229179:-
Genomic location(hg38): chr11:9203659-9207632:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
1060198
MONDO name: ischemic stroke
Disease details: ischemic stroke / IS
Disease DO ID:
-
Disease MeSH ID:
-
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma; whole blood

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: TCF7L2, NRAS, CTNNB1, KRAS, SMAD4, HIF1A, CDKN1B, CDK6, FOXO3
Associated microRNA: hsa-miR-1179, hsa-miR-1303, hsa-miR-217, hsa-miR-450b-3p, hsa-miR-769-3p, hsa-miR-512-5p, hsa-miR-513a-5p, hsa-miR-661, hsa-miR-665, hsa-miR-767-5
Biological function: May be involved in AIS pathogenesis and reflects disease severity (lower levels associated with more severe injury and longer infarct time); potential diagnostic biomarker.
Molecular mechanism: Bioinformatically predicted ceRNA network involving miRNA binding and downstream target genes; PPI core proteins identified from predicted target genes.
Biological pathway or process:

ceRNA regulation (other); apoptosis (other); proliferation (other); other pathway/process (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; Cohort Study; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Plasma hsa_circ_0004099 shows diagnostic value for AIS (AUC 0.923) and correlates negatively with NIHSS severity score and infarct time.

Description:

hsa_circ_0004099 is down-regulated in AIS patient plasma and its lower level is associated with higher NIHSS severity and longer infarct time. It shows strong diagnostic potential for AIS (ROC AUC 0.923). Bioinformatic analyses predict a ceRNA network with 10 candidate miRNAs and downstream targets enriched in apoptosis/transcriptional regulation and cancer-related/proliferation-associated genes.

Confidence score:

0.5534

Other information
Title:

Bioinformatic analysis and clinical diagnostic value of hsa_circ_0004099 in acute ischemic stroke.

Journal: PloS one
Published: 2022
PubMed ID: 36399471
Study type:

combined biological and clinical study

Data availability: -
Code availability: -