circRNA basic information
circBase ID: hsa_circ_0001535
Name: hsa_circ_FAM13B
Synonym: circFAM13B
Host Gene: FAM13B
Genomic location(hg19): chr5:137320945-137324004:-
Genomic location(hg38): chr5:137985256-137988315:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004986
MONDO name: urinary bladder carcinoma
Disease details: bladder cancer / BCa
Disease DO ID:
4007
Disease MeSH ID:
-
Disease NCIt ID:
C4912
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

BCa tissues; adjacent normal tissues

Cell lines:

BIU87; T24; RT4; 5637; 253 J; UMUC3; J82; SV-HUC; HEK 293 T

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
DN
Associated gene: IGF2BP1, PKM2, HNRNPL
Associated microRNA: -
Biological function: Inhibits proliferation, inhibits glycolysis and acidic TME, promotes CD8+ T cell activity/infiltration, and enhances anti-PD-1 immunotherapy sensitivity in bladder cancer.
Molecular mechanism: circFAM13B binds IGF2BP1 (KH3-4 domains) and competitively blocks IGF2BP1 binding to PKM2 3'UTR, reducing PKM2 mRNA stability and inhibiting glycolysis-induced acidic TME; circFAM13B biogenesis is promoted by HNRNPL via back-splicing.
Biological pathway or process:

glycolysis (inhibits); immune regulation (promotes); proliferation (inhibits); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

circRNA-seq; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RNA Pull-Down; Western Blot; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; ELISA; Flow Cytometry(Non-apoptosis/cycle); IHC (Immunohistochemistry); In Vivo Animal Model; Bioinformatics Analysis; Survival Analysis

Clinical significance:

Low expression in BCa; higher circFAM13B expression is associated with lower tumour stage and better overall survival; proposed biomarker to guide immunotherapy.

Description:

circFAM13B is down-regulated in bladder cancer and acts as a tumor-suppressive circRNA that enhances anti-PD-1 immunotherapy sensitivity. It binds IGF2BP1 to reduce PKM2 mRNA stability, inhibiting glycolysis and the acidic tumor microenvironment, thereby promoting CD8+ T cell function.

Confidence score:

0.8928

Other information
Title:

HNRNPL induced circFAM13B increased bladder cancer immunotherapy sensitivity via inhibiting glycolysis through IGF2BP1/PKM2 pathway.

Journal: Journal of experimental & clinical cancer research : CR
Published: 2023
PubMed ID: 36747239
Study type:

combined biological and clinical study

Data availability: The datasets supporting the conclusions of this article are included within the article and its additional files.
Code availability: -