circRNA basic information
circBase ID: -
Name: mmu_circ_Fndc3b
Synonym: circFndc3b
Host Gene: Fndc3b
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005068
MONDO name: myocardial infarction
Disease details: myocardial infarction
Disease DO ID:
5844
Disease MeSH ID:
D009203
Disease NCIt ID:
C27996
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Mouse
Species details: Mus musculus
Tissue specimen:

mouse heart border zone LV tissue; LV tissues; human heart tissues / cardiac tissues

Cell lines:

MCECs; HUVECs; H9c2; AC-16

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
DN
Associated gene: FUS, VEGF-A, AGO2
Associated microRNA: miR-93-3p, miR-412-3p, miR-298-5p, miR-7231-3p, miR-6998-3p
Biological function: enhances angiogenic activity, reduces cardiomyocyte and endothelial cell apoptosis, improves left ventricular function after MI
Molecular mechanism: circFndc3b binds the RNA-binding protein FUS, reduces FUS levels, and thereby increases VEGF-A expression/signaling; not a miRNA sponge
Biological pathway or process:

angiogenesis (promotes); apoptosis (inhibits); other pathway/process (other)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; Nuclear-Cytoplasmic Fractionation; Transfection; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; TUNEL; Tube Formation Assay; Transwell Assay; Western Blot; IF (Immunofluorescence); In Vivo Animal Model; H&E Staining

Clinical significance:

significantly reduced in LV tissues of ischemic cardiomyopathy patients compared to non-failing hearts; may have clinical significance in MI pathophysiology

Description:

circFndc3b is down-regulated after MI (mouse hearts) and in ischemic cardiomyopathy (human LV). Restoring circFndc3b expression protects the post-MI heart by reducing apoptosis and promoting neovascularization, largely through binding the RBP FUS and increasing VEGF-A signaling rather than via miRNA sponging.

Confidence score:

0.7768

Other information
Title:

Circular RNA CircFndc3b modulates cardiac repair after myocardial infarction via FUS/VEGF-A axis.

Journal: Nature communications
Published: 2019
PubMed ID: 31541092
Study type:

combined biological and clinical study

Data availability: GSE133503
Code availability: -