circRNA basic information
circBase ID: hsa_circ_0001459
Name: hsa_circ_NEIL3
Synonym: circ_0001459
Host Gene: NEIL3
Genomic location(hg19): chr4:178274461-178274882:+
Genomic location(hg38): chr4:177353307-177353728:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissue; adjacent normal tissue

Cell lines:

HepG2; Huh7; Hep-3B; SK-HEP-1; SMMC7721; LO2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: IGF1R, AGO2
Associated microRNA: miR-6165
Biological function: promotes proliferation, migration, invasion, tumor growth and lung metastasis; promotes epithelial-to-mesenchymal transition
Molecular mechanism: circ_0001459 acts as a ceRNA (miRNA sponge) for miR-6165 to upregulate IGF1R, affecting downstream proteins including p-Akt and EMT markers
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); EMT (promotes); PI3K/AKT (promotes); apoptosis (inhibits)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Sanger Sequencing; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Transfection; CCK8; EdU Staining; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Cell Cycle Assay; Western Blot; IHC (Immunohistochemistry); TUNEL; H&E Staining; In Vivo Animal Model; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High expression of circ_0001459 was correlated with tumor differentiation and lymph node metastasis; HCC patients with high expression of circ_0001459 displayed shorter overall survival times

Description:

circ_0001459 is upregulated in hepatocellular carcinoma and mainly localizes to the cytoplasm. It promotes HCC proliferation, migration, invasion and metastasis by sponging miR-6165 to relieve repression of IGF1R, thereby enhancing EMT-related and Akt-related signaling; high circ_0001459 associates with worse overall survival.

Confidence score:

0.8793

Other information
Title:

Circular RNA circ_0001459 accelerates hepatocellular carcinoma progression via the miR-6165/IGF1R axis.

Journal: Annals of the New York Academy of Sciences
Published: 2022
PubMed ID: 35199365
Study type:

combined biological and clinical study

Data availability: -
Code availability: -