circRNA basic information
circBase ID: hsa_circ_0050102
Name: hsa_circ_PGPEP1
Synonym: circPGPEP1
Host Gene: PGPEP1
Genomic location(hg19): chr19:18459757-18466821:+
Genomic location(hg38): chr19:18348947-18356011:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

primary CRC tumor tissues; adjacent normal tissues; mouse tumor tissues

Cell lines:

LoVo; Caco-2; SW480; SW620; HT-29; NCM460

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: NFAT5
Associated microRNA: miR-515-5p
Biological function: Promotes CRC cell proliferation, migration, invasion, EMT, tumor growth and immune escape, and inhibits apoptosis.
Molecular mechanism: circPGPEP1 functions as a ceRNA/miRNA sponge for miR-515-5p, thereby mediating/upregulating NFAT5 expression in CRC.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); EMT (promotes); apoptosis (inhibits); immune regulation (promotes); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Bioinformatics Analysis; RT-qPCR; Clinical Sample Validation; Actinomycin D / DRB Stability Assay; RNase R Treatment; Northern Blot; circRIP; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Transfection; Colony Formation Assay; EdU Staining; Annexin V/PI Flow Cytometry; Transwell Assay; ELISA; Western Blot; Flow Cytometry(Non-apoptosis/cycle); In Vivo Animal Model; IHC (Immunohistochemistry); Survival Analysis; Cohort Study

Clinical significance:

circPGPEP1 was associated with lymph node metastasis and poor survival prognosis in CRC patients.

Description:

circPGPEP1/hsa_circ_0050102 is up-regulated in colorectal cancer tissues and cell lines and is associated with lymph node metastasis and poor survival prognosis. It promotes CRC malignancy and immune escape by sponging miR-515-5p to mediate NFAT5 expression, thereby enhancing proliferation, migration, invasion, EMT and tumor growth while suppressing apoptosis and anti-tumor T-cell activity.

Confidence score:

0.8889

Other information
Title:

Circular RNA PGPEP1 induces colorectal cancer malignancy and immune escape.

Journal: Cell cycle (Georgetown, Tex.)
Published: 2023
PubMed ID: 37424115
Study type:

combined biological and clinical study

Data availability: circMine ID: HSACM000049
Code availability: -