circRNA basic information
circBase ID: hsa_circ_0012634
Name: hsa_circ_TMEM59
Synonym: circTMEM59
Host Gene: TMEM59
Genomic location(hg19): chr1:54506428-54509198:-
Genomic location(hg38): chr1:54040755-54043525:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005184
MONDO name: pancreatic ductal adenocarcinoma
Disease details: pancreatic ductal adenocarcinoma / PDAC
Disease DO ID:
3498, 3587
Disease MeSH ID:
D021441
Disease NCIt ID:
C9120
Disease ICD11 ID:
581089833
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

PDAC tissues; adjacent normal tissues

Cell lines:

PANC-1; CFPAC-1; SW1990; BXPC-3; HPDE

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: SOCS1, Ago2
Associated microRNA: miR-147b
Biological function: Inhibits PDAC cell proliferation, invasion and EMT (tumor suppressor role).
Molecular mechanism: Acts as a miRNA sponge for miR-147b to regulate SOCS1 expression (ceRNA-like mechanism), thereby suppressing PDAC progression.
Biological pathway or process:

proliferation (inhibits); invasion (inhibits); EMT (inhibits); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Bioinformatics Analysis; RT-qPCR; RNase R Treatment; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; CCK8; Transwell Assay; Western Blot; Clinical Sample Validation; Survival Analysis; Microarray

Clinical significance:

Low circTMEM59 expression was correlated with short survival time and poor clinicopathological characteristics in PDAC patients.

Description:

circTMEM59 is down-regulated in PDAC tissues/cell lines and functions as a tumor suppressor. It sponges miR-147b to relieve repression of SOCS1, thereby inhibiting PDAC cell proliferation, invasion and EMT, and low circTMEM59 associates with worse survival.

Confidence score:

0.814

Other information
Title:

Circular RNA circTMEM59 inhibits progression of pancreatic ductal adenocarcinoma by targeting miR-147b/SOCS1: An in vitro study.

Journal: Heliyon
Published: 2024
PubMed ID: 38304778
Study type:

combined biological and clinical study

Data availability: GSE69362; https://doi.org/10.1016/j.heliyon.2024.e24402
Code availability: -