circRNA basic information
circBase ID: -
Name: hsa_circ_BRIP1
Synonym: circBRIP1 / circcBRIP1
Host Gene: BRIP1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small cell lung cancer / NSCLC
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma; cancer tissues; adjacent non-tumor tissues; paracancerous tissues

Cell lines:

HBE; NCI-H1299; A549; PC-9; NCI-H226; SPC-A1

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: AGO1, METTL3, DGCR8, MOV10
Associated microRNA: hsa-miR-526b-3p, Has-miR-302a-3p
Biological function: potential biomarker for diagnosis and dynamic monitoring; associated with tumor progression and metastasis-related clinicopathological features
Molecular mechanism: predicted to interact with RNA-binding proteins and may also act as a ceRNA; downstream network analyzed by bioinformatics (GO/KEGG)
Biological pathway or process:

ceRNA regulation (other); immune regulation (other); other pathway/process (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Sanger Sequencing; RNase R Treatment; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Actinomycin D / DRB Stability Assay; ROC Analysis; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

Diagnostic biomarker with high AUC; high plasma expression associated with tumor differentiation, TNM stage, T stage, lymph node metastasis, and distant metastasis; potential for dynamic monitoring

Description:

circBRIP1 is up-regulated in NSCLC tissues, cell lines, and patient plasma and shows diagnostic value (ROC AUC reported). It localizes to both nucleus and cytoplasm (nucleus-predominant) and is bioinformatically predicted to function via RBP interactions and a circRNA-miRNA-mRNA ceRNA network, with enrichment suggesting immune-related involvement.

Confidence score:

0.7038

Other information
Title:

CircBRIP1: a plasma diagnostic marker for non-small-cell lung cancer.

Journal: Journal of cancer research and clinical oncology
Published: 2024
PubMed ID: 38329551
Study type:

combined biological and clinical study

Data availability: 10.1007/s00432-023-05558-5
Code availability: -