circRNA basic information
circBase ID: hsa_circ_0122319
Name: hsa_circ_PLOD2
Synonym: -
Host Gene: PLOD2
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: stage II/III colon cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

frozen tumor tissues; adjacent normal tissues

Cell lines:

SW620; HCT116

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: promotes colon cancer cell migration
Molecular mechanism: Loss-of-function (shRNA knockdown) suggests a pro-migratory role; downstream mechanism not specified for this circRNA.
Biological pathway or process:

migration (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; Bioinformatics Analysis; RT-qPCR; Clinical Sample Validation; Cohort Study; Survival Analysis; ROC Analysis; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Transfection; Transwell Assay

Clinical significance:

Included in a four-circRNA-based cirScore that stratifies recurrence risk and is associated with shorter DFS and OS in high-risk (high cirScore) patients.

Description:

hsa_circ_0122319 is overexpressed in recurrent stage II/III colon cancer and in colon cancer cell lines. Its knockdown suppresses colon cancer cell migration, supporting a pro-metastatic role; it also contributes to a four-circRNA cirScore that predicts recurrence risk and worse survival when high.

Confidence score:

0.8004

Other information
Title:

A circRNA signature predicts postoperative recurrence in stage II/III colon cancer.

Journal: EMBO molecular medicine
Published: 2019
PubMed ID: 31475771
Study type:

combined biological and clinical study

Data availability: SRA551560 (PRJNA551560); PRJCA001113
Code availability: https://github.com/likelet/CircRNA_colon_recurrent_prediction; https://github.com/likelet/RNAseqPipe