circRNA basic information
circBase ID: hsa_circ_0000384
Name: hsa_circ_MRPS35
Synonym: -
Host Gene: MRPS35
Genomic location(hg19): chr12:27867712-27877119:+
Genomic location(hg38): chr12:27714779-27724186:+
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent normal tissues

Cell lines:

AGS; HGC27; GES-1; MKN45; MKN74; MKN28; BGC823; SGC7901; MGC803; HEK-293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: KAT7, FOXO1, FOXO3a, H4K5ac, p21, p27, Twist1, E-cadherin
Associated microRNA: -
Biological function: Suppresses proliferation and invasion/metastasis of gastric cancer cells; induces G1 cell cycle arrest; inhibits tumor growth and lung metastasis in vivo.
Molecular mechanism: Acts as a modular scaffold recruiting histone acetyltransferase KAT7 to FOXO1/FOXO3a promoters, increasing H4K5 acetylation and activating FOXO1/FOXO3a transcription, altering downstream targets (p21, p27, Twist1, E-cadherin).
Biological pathway or process:

proliferation (inhibits); invasion (inhibits); metastasis (inhibits); cell cycle (inhibits); FOXO signaling (promotes); other pathway/process (promotes); histone modification (promotes)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; ISH (In Situ Hybridization); Clinical Sample Validation; Cohort Study; Survival Analysis; ROC Analysis; Transfection; CCK8; Cell Cycle Assay; Transwell Assay; In Vivo Animal Model; IHC (Immunohistochemistry); H&E Staining; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; RNA Pull-Down; RIP (RNA Immunoprecipitation); ChIP / ChIP-seq; Western Blot; Bioinformatics Analysis

Clinical significance:

Lower expression of circMRPS35 is associated with shorter survival time in gastric cancer patients; circMRPS35 expression is related to clinicopathological characteristics and prognosis.

Description:

circMRPS35 (hsa_circ_0000384) is down-regulated in gastric cancer and functions as a tumor suppressor. It localizes mainly in the nucleus and scaffolds KAT7 to FOXO1/FOXO3a promoters to increase H4K5 acetylation, thereby transcriptionally activating FOXO1/FOXO3a and downstream genes (p21/p27, Twist1, E-cadherin) to inhibit proliferation, cell-cycle progression, invasion and metastasis. Low circMRPS35 expression is associated with worse patient survival.

Confidence score:

0.9043

Other information
Title:

CircMRPS35 suppresses gastric cancer progression via recruiting KAT7 to govern histone modification.

Journal: Molecular cancer
Published: 2020
PubMed ID: 32164722
Study type:

combined biological and clinical study

Data availability: GSE121445; GSE121382; http://genome.ucsc.edu/s/jieMM/hg38_FINAL
Code availability: -