circRNA basic information
circBase ID: hsa_circ_0001900
Name: hsa_circ_CAMSAP1
Synonym: hsa_circRNA_104962
Host Gene: CAMSAP1
Genomic location(hg19): chr9:138773478-138774924:-
Genomic location(hg38): chr9:135881632-135883078:-
Subcellular localization: extracellular
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma; CRC tumor tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: Acts as a circulating plasma diagnostic biomarker for CRC; correlated with tumor size, TNM stage, lymph node metastasis, and distant metastasis.
Molecular mechanism: Not mechanistically tested; plasma levels were positively correlated with intratumoral levels and decreased after tumor resection, suggesting tumor-derived circulating circRNA.
Biological pathway or process:

not specified

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; Sanger Sequencing; RT-qPCR; Clinical Sample Validation; ROC Analysis

Clinical significance:

Upregulated plasma hsa_circ_0001900 had diagnostic value for CRC with AUC 0.722 and was correlated with tumor size, TNM stage, lymph node metastasis, and distant metastasis.

Description:

hsa_circ_0001900 is upregulated in plasma and CRC tumor tissues of CRC patients. It was validated by qRT-PCR and Sanger sequencing and showed diagnostic utility for distinguishing CRC from non-CRC samples, especially as part of the three-circRNA CircPanel.

Confidence score:

0.63

Other information
Title:

Plasma circular RNA panel acts as a novel diagnostic biomarker for colorectal cancer detection.

Journal: American journal of translational research
Published: 2020
PubMed ID: 33312376
Study type:

combined biological and clinical study

Data availability: Table S3; Table S4; Table S5
Code availability: -