circRNA basic information
circBase ID: hsa_circ_0006835
Name: hsa_circ_NHSL1
Synonym: -
Host Gene: NHSL1
Genomic location(hg19): chr6:138794442-138817508:-
Genomic location(hg38): chr6:138473305-138496371:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent normal tissues; normal gastric tissues

Cell lines:

MKN-28; AGS; MKN-45; BGC-823; MGC-803; HGC-27; SGC-7901; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SIX1, Vimentin, AGO2
Associated microRNA: miR-1306-3p
Biological function: promotes cell mobility, migration and invasion; promotes tumorigenesis and metastasis in vivo
Molecular mechanism: ceRNA sponge of miR-1306-3p to relieve repression of SIX1, which transcriptionally upregulates Vimentin
Biological pathway or process:

migration (promotes); invasion (promotes); metastasis (promotes); proliferation (promotes); EMT (promotes); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; Transwell Assay; Wound Healing Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis

Clinical significance:

high circNHSL1 expression correlates with advanced clinicopathological features and poor prognosis; potential diagnostic and prognostic marker

Description:

circNHSL1 is up-regulated in gastric cancer and promotes migration, invasion, tumor growth and metastasis. It functions mainly as a ceRNA by sponging miR-1306-3p to de-repress SIX1, which in turn transcriptionally increases Vimentin expression, driving malignant progression and correlating with poor prognosis.

Confidence score:

0.8766

Other information
Title:

Circular RNA circNHSL1 promotes gastric cancer progression through the miR-1306-3p/SIX1/vimentin axis.

Journal: Molecular cancer
Published: 2019
PubMed ID: 31438963
Study type:

combined biological and clinical study

Data availability: The datasets used for the current study are available from the corresponding author on reasonable request.
Code availability: -