circRNA basic information
circBase ID: hsa_circ_0082002
Name: hsa_circ_MET
Synonym: circMET / hsa-MET_000001
Host Gene: MET
Genomic location(hg19): chr7:116339124-116340338:+
Genomic location(hg38): chr7:116699070-116700284:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004992
MONDO name: cancer
Disease details: cancer
Disease DO ID:
0050686, 0050687, 162
Disease MeSH ID:
-
Disease NCIt ID:
C9305
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma; blood-derived cell-free RNA (cfRNA); tumor tissues; FFPE tumors; liver biopsy; lung adenocarcinomas; colon carcinomas

Cell lines:

WiDr; HCC827; HEK293T; GLT16; COLO 205; RD18; NIH 10T1/2

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: MET, Exportin-1
Associated microRNA: -
Biological function: Biomarker to identify/stratify and longitudinally monitor patients with high MET activity and MET amplification (including acquired resistance) and to track therapy response/clonal evolution.
Molecular mechanism: circMET abundance correlates with MET expression/activity and MET gene amplification; cytoplasmic enrichment depends on Exportin-1.
Biological pathway or process:

other pathway/process (other); drug resistance (promotes)

Detected method:
Q
B
Validation methods:

Bioinformatics Analysis; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Northern Blot; Actinomycin D / DRB Stability Assay; RT-qPCR; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; FISH / smFISH; IHC (Immunohistochemistry); In Vivo Animal Model; Transfection; CCK8; Colony Formation Assay; Digital PCR

Clinical significance:

circMET measurement identifies and tracks patients with high MET activity and can non-invasively monitor emergence of MET amplification as acquired resistance and therapy response using liquid biopsy.

Description:

This study identifies circMET (hsa_circ_0082002), a MET exon 2-derived circRNA, and shows it is increased in high-MET tumors. circMET levels correlate with MET expression/activity and MET amplification, enabling non-invasive patient stratification and longitudinal monitoring of MET-driven acquired resistance and response to anti-MET therapies via plasma cfRNA.

Confidence score:

0.8124

Other information
Title:

Exploring circular MET RNA as a potential biomarker in tumors exhibiting high MET activity.

Journal: Journal of experimental & clinical cancer research : CR
Published: 2023
PubMed ID: 37170152
Study type:

combined biological and clinical study

Data availability: MiOncoCirc: https://mioncocirc.github.io; circBase: http://www.circbase.org; circAtlas: http://circatlas.biols.ac.cn; circRNADb: http://reprod.njmu.edu.cn/cgi-bin/circrnadb/circRNADb.php; deepbase v2.0: http://biocenter.sysu.edu.cn/deepBase/; circpedia V2: http://yang-laboratory.com/circpedia/
Code availability: -