circRNA basic information
circBase ID: hsa_circ_0000005
Name: hsa_circ_CDK11A
Synonym: circ_002136 / hsa_circCDK11A_001
Host Gene: CDK11A
Genomic location(hg19): chr1:1586822-1650894:-
Genomic location(hg38): chr1:1655368-1719455:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissue; matched histologically normal tissue

Cell lines:

SGC7901; BGC823; SGC7901/Tax; BGC823/Tax

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: HMGA1
Associated microRNA: miR-16-5p
Biological function: promotes paclitaxel resistance, migration and invasion, and inhibits apoptosis in Tax-resistant gastric cancer cells; its knockdown sensitizes cells/tumors to paclitaxel and suppresses malignant progression
Molecular mechanism: ceRNA mechanism: circ_002136 sponges miR-16-5p to release HMGA1 repression, promoting paclitaxel resistance and invasion
Biological pathway or process:

ceRNA regulation (promotes); drug resistance (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Transfection; CCK8; Wound Healing Assay; Transwell Assay; Annexin V/PI Flow Cytometry; Luciferase Reporter Assay; RNA Pull-Down; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

higher circ_002136 expression correlates with paclitaxel (Tax) resistance/sensitivity in gastric cancer patients

Description:

circ_002136 (hsa_circ_002136) is upregulated in gastric cancer, especially in paclitaxel-resistant tissues/cells. It promotes paclitaxel resistance and invasive behaviors by sponging miR-16-5p to derepress HMGA1; silencing circ_002136 increases paclitaxel sensitivity, inhibits migration/invasion, and induces apoptosis in vitro and suppresses xenograft growth in vivo.

Confidence score:

0.8442

Other information
Title:

Silencing of circ_002136 sensitizes gastric cancer to paclitaxel by targeting the miR-16-5p/HMGA1 axis.

Journal: Open medicine (Warsaw, Poland)
Published: 2023
PubMed ID: 36760722
Study type:

combined biological and clinical study

Data availability: available from the corresponding author upon request
Code availability: -