circRNA basic information
circBase ID: hsa_circ_0141206
Name: hsa_circ_VRK1
Synonym: -
Host Gene: VRK1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: breast cancer
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

breast cancer tissues; adjacent tissues; tumour tissue

Cell lines:

BT474; MCF7; MDA‐MB‐453; MDA‐MB‐231; MCF10A

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: miR‐129‐5p, miR‐136‐5p
Biological function: inhibits cell proliferation; promotes apoptosis
Molecular mechanism: Proposed miRNA sponge mechanism (miR‐129‐5p, miR‐136‐5p) based on TSCD database; not experimentally validated in this study.
Biological pathway or process:

proliferation (inhibits); apoptosis (promotes); ceRNA regulation (other)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Clinical Sample Validation; Cohort Study; Survival Analysis; ROC Analysis; Transfection; CCK8; Annexin V/PI Flow Cytometry

Clinical significance:

Downregulated in breast cancer tumour tissues; good value to distinguish tumour from adjacent tissue (ROC AUC 0.720); high expression associated with smaller tumour size, reduced T stage, lower TNM stage; independent predictor of better overall survival.

Description:

circ‐VRK1 is down-regulated in breast cancer tumor tissues and lower in several breast cancer cell lines. Functionally, circ‐VRK1 suppresses proliferation and promotes apoptosis in MDA‐MB‐231 cells, and higher circ‐VRK1 expression is associated with earlier stage disease and better overall survival.

Confidence score:

0.7211

Other information
Title:

Circular RNA VRK1 correlates with favourable prognosis, inhibits cell proliferation but promotes apoptosis in breast cancer.

Journal: Journal of clinical laboratory analysis
Published: 2020
PubMed ID: 31970831
Study type:

combined biological and clinical study

Data availability: -
Code availability: -