circRNA basic information
circBase ID: hsa_circ_0029634
Name: hsa_circ_ZMYM2
Synonym: circZMYM2
Host Gene: ZMYM2
Genomic location(hg19): chr13:20632714-20633702:+
Genomic location(hg38): chr13:20058574-20059562:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009807
MONDO name: osteosarcoma
Disease details: Osteosarcoma / OS
Disease DO ID:
3347
Disease MeSH ID:
D012516
Disease NCIt ID:
C9145
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

OS tissues; adjacent normal tissues

Cell lines:

143 B; U-2OS; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: NCBP2, FXR1, NACA, ARPC1B
Associated microRNA: -
Biological function: promotes cell growth, migration, invasion/metastasis and tumor growth in osteosarcoma
Molecular mechanism: circZMYM2 binds FXR1 as an RBP sponge and regulates post-transcriptional translation of NACA and ARPC1B; its biogenesis is regulated by NCBP2 binding to flanking intronic sequences
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); cell cycle (promotes); apoptosis (inhibits); other pathway/process (other)

Detected method:
Q
S
M
Validation methods:

RNA-seq; Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Transfection; CCK8; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Western Blot; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; In Vivo Animal Model; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

potential diagnostic and therapeutic biomarker for OS patients

Description:

circZMYM2 (hsa_circ_0029634), derived from ZMYM2, is up-regulated in osteosarcoma tissues and mainly localizes to the cytoplasm. It promotes osteosarcoma proliferation and metastasis by competitively binding the RBP FXR1, thereby modulating translation of NACA and ARPC1B; its biogenesis is promoted by NCBP2 binding to flanking intronic regions.

Confidence score:

0.8397

Other information
Title:

CircZMYM2 plays a pivotal role in osteosarcoma by regulating the translation of NACA and ARPC1B.

Journal: Heliyon
Published: 2024
PubMed ID: 39624324
Study type:

combined biological and clinical study

Data availability: GSE126209; GSE96964; GSE12865
Code availability: -