circRNA basic information
circBase ID: hsa_circ_0006117
Name: hsa_circ_PTPRA
Synonym: circPTPRA
Host Gene: PTPRA
Genomic location(hg19): chr20:2944917-2945848:+
Genomic location(hg38): chr20:2964271-2965202:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004986
MONDO name: urinary bladder carcinoma
Disease details: bladder cancer
Disease DO ID:
4007
Disease MeSH ID:
-
Disease NCIt ID:
C4912
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

BC specimens; adjacent normal bladder tissue

Cell lines:

T24; UM-UC-3; SV-HUC-1; HEK-293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: KLF9
Associated microRNA: miR-636
Biological function: inhibits BC cell proliferation in vitro and tumor growth in vivo
Molecular mechanism: circPTPRA acts as a ceRNA by sponging miR-636 to relieve miR-636-mediated repression of KLF9
Biological pathway or process:

proliferation (inhibits); ceRNA regulation (other)

Detected method:
Q
Validation methods:

Bioinformatics Analysis; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; Actinomycin D / DRB Stability Assay; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Western Blot; IHC (Immunohistochemistry); Clinical Sample Validation; Survival Analysis; In Vivo Animal Model

Clinical significance:

low circPTPRA expression is associated with poor prognosis, advanced tumor stage and larger tumor size

Description:

circPTPRA is down-regulated in bladder cancer and functions as a tumor suppressor. It mainly localizes in the cytoplasm and acts as a ceRNA that sponges miR-636, thereby relieving repression of KLF9 and inhibiting bladder cancer cell proliferation and xenograft tumor growth. Low circPTPRA expression is associated with poor prognosis and more advanced disease features.

Confidence score:

0.8806

Other information
Title:

CircPTPRA acts as a tumor suppressor in bladder cancer by sponging miR-636 and upregulating KLF9.

Journal: Aging
Published: 2019
PubMed ID: 31821171
Study type:

combined biological and clinical study

Data availability: GEO97239
Code availability: -