circRNA basic information
circBase ID: hsa_circ_0000419
Name: hsa_circ_RAB3IP
Synonym: -
Host Gene: -
Genomic location(hg19): chr12:70193988-70195501:+
Genomic location(hg38): chr12:69800208-69801721:+
Subcellular localization: exosome
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; paired paracarcinoma tissues; gastric mucosa tissues; plasma; plasma exosomes

Cell lines:

GES-1; BGC-823; HGC-27; MGC-803; SGC-7901

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: downstream targets, target genes, MYC
Associated microRNA: hsa-miR-141-5p, hsa-miR-589-3p
Biological function: hsa_circ_0000419 is decreased in gastric cancer and is proposed as a biomarker for GC screening and prognostic estimation; bioinformatics analysis suggests involvement in gastric tumorigenesis and progression via interactions with microRNAs.
Molecular mechanism: Predicted ceRNA-like interaction with hsa-miR-141-5p and hsa-miR-589-3p via miRNA response elements to regulate downstream target genes and cancer-related pathways.
Biological pathway or process:

ceRNA regulation (other); cell cycle (other); other pathway/process (other)

Detected method:
Q
M
Validation methods:

RT-qPCR; Microarray; Sanger Sequencing; Clinical Sample Validation; ROC Analysis; Survival Analysis; Bioinformatics Analysis

Clinical significance:

hsa_circ_0000419 is a novel biomarker for GC screening and an important indicator for prognostic estimation; lower tissue levels are associated with worse overall survival and disease-free survival, and plasma levels correlate with tumor stage, metastasis, venous invasion and perineural invasion.

Description:

hsa_circ_0000419 is significantly down-regulated in gastric cancer cell lines, tumor tissues, and plasma. Its lower expression is associated with worse survival and advanced clinicopathological features, supporting its value as a GC screening and prognostic biomarker. Bioinformatics analysis suggests that it may participate in gastric tumorigenesis and progression through hsa-miR-141-5p and hsa-miR-589-3p-related downstream regulatory networks.

Confidence score:

0.636

Other information
Title:

Clinical significance of hsa_circ_0000419 in gastric cancer screening and prognosis estimation.

Journal: Pathology, research and practice
Published: 2020
PubMed ID: 31810586
Study type:

combined biological and clinical study

Data availability: -
Code availability: -