circRNA basic information
circBase ID: hsa_circ_0093335
Name: hsa_circ_BMI1
Synonym: circ0093335
Host Gene: BMI1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumour specimens

Cell lines:

LO2; Huh7; Hep3B; MHCC97H; HCCLM3; HEK293

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: AGO2
Associated microRNA: miR-338-5p
Biological function: promotes HCC cell proliferation, migration and invasion, and promotes mouse tumour growth
Molecular mechanism: acts as a miR-338-5p sponge and downregulates miR-338-5p
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry)

Clinical significance:

High circ0093335 expression was linked with the tumour-node-metastasis stage and microvascular tumour invasion.

Description:

circ0093335 is up-regulated in hepatocellular carcinoma tissues and cell lines and promotes tumor growth and aggressive phenotypes. It mainly localizes in the cytoplasm and accelerates HCC progression by sponging miR-338-5p.

Confidence score:

0.8228

Other information
Title:

CircularRNA Hsa_circ_0093335 promotes hepatocellular carcinoma progression via sponging miR-338-5p.

Journal: Journal of cellular and molecular medicine
Published: 2023
PubMed ID: 37837352
Study type:

combined biological and clinical study

Data availability: The data that support the findings of this study are available from the corresponding author upon reasonable request.
Code availability: -