circRNA basic information
circBase ID: -
Name: hsa_circ_SMARCA5
Synonym: circSMARCA5
Host Gene: SMARCA5
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: exosome
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0000001
MONDO name: disease
Disease details: Systemic Disease Biomarkers
Disease DO ID:
4
Disease MeSH ID:
D004194
Disease NCIt ID:
C2991
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma EVs; urine EVs

Cell lines:

HepG2; Hela; SK-Hep-1; HuH-7

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UN
Associated gene: YBX1
Associated microRNA: -
Biological function: Potential extracellular vesicle marker (enriched in EVs with high back-splicing ratio).
Molecular mechanism: RBP-associated sorting into EVs via interaction with YBX1.
Biological pathway or process:

other pathway/process (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RIP (RNA Immunoprecipitation)

Clinical significance:

Potential marker for distinguishing EVs from other tissue/cell components.

Description:

circSMARCA5 is highly prevalent and enriched in extracellular vesicles, showing higher EV abundance than its linear host gene. It can serve as a potential EV marker and is associated with RBP-mediated sorting through interaction with YBX1.

Confidence score:

0.3401

Other information
Title:

Circular RNA landscape in extracellular vesicles from human biofluids.

Journal: Genome medicine
Published: 2024
PubMed ID: 39482783
Study type:

combined biological and clinical study

Data availability: PRJNA1012336; PRJNA1010887; https://doi.org/10.6084/m9.figshare.25559121.v1
Code availability: -