circRNA basic information
circBase ID: -
Name: -
Synonym: circSKA3
Host Gene: -
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC cancer tissue; para-carcinoma tissue

Cell lines:

SW620; HCT116

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: YTHDF2, STAT5A
Associated microRNA: miR-1238
Biological function: promote proliferation, migration, and invasion of colorectal cancer cells; promote CRC progression/metastasis
Molecular mechanism: Acts as a ceRNA to sponge miR-1238, increasing YTHDF2 expression; associated with decreased STAT5A methylation via YTHDF2
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); ceRNA regulation (promotes); m6A modification (other)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Wound Healing Assay; Transwell Assay; RIP (RNA Immunoprecipitation)

Clinical significance:

-

Description:

circSKA3 is up-regulated in colorectal cancer tissues and promotes malignant phenotypes (proliferation, migration, invasion) in CRC cells. Mechanistically, circSKA3 acts as a ceRNA to sponge miR-1238, thereby increasing YTHDF2 expression and linking to reduced STAT5A methylation.

Confidence score:

0.7032

Other information
Title:

circSKA3 promotes colorectal cancer metastases through miR-1238 and methylation.

Journal: Molecular and cellular biochemistry
Published: 2024
PubMed ID: 37256443
Study type:

combined biological and clinical study

Data availability: -
Code availability: -