circRNA basic information
circBase ID: -
Name: hsa_circ_SMARCA5
Synonym: circSMARCA5
Host Gene: SMARCA5
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0018177
MONDO name: glioblastoma
Disease details: glioblastoma / GBM
Disease DO ID:
3068
Disease MeSH ID:
D005909
Disease NCIt ID:
C3058
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

GBM biopsies; unaffected brain parenchyma (UC) biopsies

Cell lines:

U87MG; A172; CAS-1; SNB-19; U251MG

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: IGFBP2, NRAS, SRSF1, VEGFA
Associated microRNA: miR-126-3p, miR-515-5p
Biological function: tumor suppressor; regulates downstream miRNAs and inhibits expression of oncogenic targets in GBM context
Molecular mechanism: Upstream regulation of miRNA expression (miR-126-3p, miR-515-5p) with downstream repression of targets (IGFBP2, NRAS); previously shown decoy for RBP SRSF1 affecting splicing
Biological pathway or process:

ceRNA regulation (other); angiogenesis (inhibits); migration (inhibits); invasion (inhibits)

Detected method:
Q
Validation methods:

RT-qPCR; Transfection; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

circSMARCA5 has been described as a good diagnostic candidate biomarker of GBM (serum-derived EVs).

Description:

In glioblastoma, circSMARCA5 is down-regulated and functions as a tumor suppressor. It acts as an upstream regulator increasing miR-126-3p and miR-515-5p, which are associated with reduced expression of their oncogenic mRNA targets IGFBP2 and NRAS, and is also linked to RBP (SRSF1) decoy/splicing-related regulation.

Confidence score:

0.4535

Other information
Title:

circSMARCA5 Is an Upstream Regulator of the Expression of miR-126-3p, miR-515-5p, and Their mRNA Targets, Insulin-like Growth Factor Binding Protein 2 (IGFBP2) and NRAS Proto-Oncogene, GTPase (NRAS) in Glioblastoma.

Journal: International journal of molecular sciences
Published: 2022
PubMed ID: 36430152
Study type:

combined biological and clinical study

Data availability: available from the corresponding author upon reasonable request
Code availability: -