circRNA basic information
circBase ID: hsa_circ_0000221
Name: hsa_circ_VIM
Synonym: -
Host Gene: VIM
Genomic location(hg19): chr10:17271723-17271867:-
Genomic location(hg38): chr10:17229724-17229868:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: Hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

sera

Cell lines:

HepG2 / Hep-G2; SNU449

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: PTPN11
Associated microRNA: miR-661
Biological function: Inhibits cell viability and colony formation; induces apoptosis; causes G1 accumulation (cell-cycle arrest).
Molecular mechanism: Proposed ceRNA mechanism: hsa-circ-0000221 inhibits (sponges) miR-661, leading to increased PTPN11 mRNA; associated with caspase-dependent, mitochondrial-dependent apoptosis.
Biological pathway or process:

apoptosis (promotes); cell cycle (inhibits); proliferation (inhibits); ceRNA regulation (other)

Detected method:
Q
Validation methods:

Bioinformatics Analysis; RT-qPCR; Clinical Sample Validation; Sanger Sequencing; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; Western Blot

Clinical significance:

Depletion of serum hsa-circ-0000221 is proposed as a stable serum biomarker for HCC diagnosis.

Description:

In HCC, hsa-circ-0000221 (VIM-derived) is down-regulated in patient serum and functions as a tumor suppressor in vitro. Its overexpression in HepG2/SNU449 inhibits miR-661 and increases PTPN11 mRNA, reducing viability/colony formation and inducing G1 accumulation and caspase/mitochondria-associated apoptosis.

Confidence score:

0.6536

Other information
Title:

Impact of circ-0000221 in the Pathogenesis of Hepatocellular via Modulation of miR-661-PTPN11 mRNA Axis.

Journal: Pharmaceutics
Published: 2022
PubMed ID: 35057034
Study type:

combined biological and clinical study

Data availability: The data reported in this study are available on request from the corresponding authors.
Code availability: -