circRNA basic information
circBase ID: hsa_circ_0087960
Name: hsa_circ_FABP4
Synonym: hsa_circ0087960
Host Gene: FABP4
Genomic location(hg19): chr9:113734352-113735838:-
Genomic location(hg38): chr9:110972072-110973558:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
 5672, 9256
Disease MeSH ID:
 -
Disease NCIt ID:
 C4978
Disease ICD11 ID:
 -
Disease OMIM ID:
 114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumour tissue; normal tissue; paracancer tissue
Cell lines:

LoVo; HCT116; SW480; NCM460
In vivo animal model:

-
circRNA-disease information
Expression pattern:
UN
Associated gene: FABP4
Associated microRNA: -
Biological function: promotes proliferation
Molecular mechanism: circRNA-miRNA-mRNA regulatory network (ceRNA-like) with concordant host gene association (FABP4)
Biological pathway or process:

proliferation (promotes); ceRNA regulation (other)
Detected method:
Q
S
Validation methods:

RNA-seq; Bioinformatics Analysis; RT-qPCR; Clinical Sample Validation; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; Transfection; EdU Staining
Clinical significance:

-
Description:

In CRC cells, hsa_circ_0087960 supports proliferation: its silencing increased proliferation in LoVo cells, implying a pro-proliferative role for the endogenous circRNA. It is included in a predicted circRNA-miRNA-mRNA regulatory network and shows concordant expression with its host gene FABP4.
Confidence score:

0.6956
Other information
Title:

Comprehensive circular RNA profiling provides insight into colorectal cancer pathogenesis and reveals diagnostically relevant biomarkers.

Journal: Clinical and translational medicine
Published: 2024
PubMed ID: 39397316
Study type:

combined biological and clinical study
Data availability: PRJCA019939; GSE161277; GSE221240; GSE235850
Code availability: https://github.com/wangjun‐bio/miRlab/tree/CRC