circRNA basic information
circBase ID: hsa_circ_0006168
Name: hsa_circ_CNOT6L
Synonym: circ_0006168 / CircRNA_0006168
Host Gene: CNOT6L
Genomic location(hg19): chr4:78694234-78697546:-
Genomic location(hg38): chr4:77773080-77776392:-
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005580
MONDO name: esophageal squamous cell carcinoma
Disease details: esophageal squamous cell carcinoma / ESCC
Disease DO ID:
3748
Disease MeSH ID:
C562729; D000077277
Disease NCIt ID:
C4024
Disease ICD11 ID:
1417891145
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ESCC tissues; adjacent non-tumorous tissues

Cell lines:

Eca-109; KYSE-30; KYSE-450; TE-1; Het-1A; 293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: STAT3, Snail, IGF2BP2, METTL3, METTL14, Ago2
Associated microRNA: miR-384
Biological function: Promotes cell proliferation, migration, invasion and cell cycle progression; inhibits apoptosis; promotes EMT in ESCC cells.
Molecular mechanism: METTL3/METTL14-mediated m6A modification enhances circ_0006168 stability via IGF2BP2; circ_0006168 functions as a ceRNA sponge for miR-384 to upregulate STAT3 and activate STAT3/Snail-driven EMT.
Biological pathway or process:

EMT (promotes); proliferation (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits); cell cycle (promotes); ceRNA regulation (promotes); m6A modification (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNase R Treatment; Back-Splice Junction PCR / divergent primers PCR; MeRIP / MeRIP-seq; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Wound Healing Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; Western Blot; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

High expression of circ_0006168 was positively correlated with histological grade, TNM stage and lymphatic metastasis in ESCC.

Description:

circ_0006168 is up-regulated in ESCC and acts as an oncogenic circRNA. Its m6A modification (mainly via METTL3) is recognized by IGF2BP2 to enhance circ_0006168 stability/expression, and circ_0006168 promotes proliferation and EMT-related migration/invasion by sponging miR-384 to increase STAT3 and downstream Snail.

Confidence score:

0.8416

Other information
Title:

N6-methyladenosine-modified circ_0006168 promotes epithelial mesenchymal transition via miR-384/STAT3/Snail axis in esophageal squamous cell carcinoma.

Journal: Journal of Cancer
Published: 2024
PubMed ID: 39132166
Study type:

combined biological and clinical study

Data availability: -
Code availability: -