circRNA basic information
circBase ID: hsa_circ_0039411
Name: hsa_circ_MMP2
Synonym: circular RNA_0039411
Host Gene: -
Genomic location(hg19): chr16:55523562-55540586:+
Genomic location(hg38): chr16:55489650-55506674:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005075
MONDO name: thyroid gland papillary carcinoma
Disease details: papillary thyroid carcinoma / PTC
Disease DO ID:
3969
Disease MeSH ID:
-
Disease NCIt ID:
C4035
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

PTC tissue specimens; adjacent healthy tissue specimens; tumor tissues

Cell lines:

TPC-1; BHT-101; NTHY-ORI3.1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SOX4, SRY-box transcription factor 4, cyclin D1, vimentin, Bax, Ki-67
Associated microRNA: miR-423-5p
Biological function: Circ_0039411 promotes colony formation, migration, invasion, glycolysis, malignant behaviors, and xenograft tumor growth, and inhibits apoptosis in papillary thyroid carcinoma.
Molecular mechanism: Circ_0039411 functions as a miRNA sponge for miR-423-5p and positively regulates SOX4 expression through the miR-423-5p/SOX4 axis.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits); glycolysis (promotes); ceRNA regulation (other)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Transfection; Colony Formation Assay; Transwell Assay; Annexin V/PI Flow Cytometry; Western Blot; Luciferase Reporter Assay; RNA Pull-Down; In Vivo Animal Model; IHC (Immunohistochemistry); Bioinformatics Analysis

Clinical significance:

-

Description:

Circ_0039411 is up-regulated in papillary thyroid carcinoma tissues and cell lines. It acts as an oncogenic circRNA that promotes malignant phenotypes and glycolysis while suppressing apoptosis, partly through sponging miR-423-5p to increase SOX4 expression. Knockdown of circ_0039411 also suppresses xenograft tumor growth in vivo.

Confidence score:

0.7548

Other information
Title:

Circ_0039411 promotes papillary thyroid carcinoma development through mediating the miR-423-5p/SOX4 signaling.

Journal: The International journal of biological markers
Published: 2021
PubMed ID: 34738852
Study type:

combined biological and clinical study

Data availability: Please contact the correspondence author for the data request; Supplemental material for this article is available online
Code availability: -