circRNA basic information
circBase ID: hsa_circ_0016788
Name: hsa_circ_TRIM11
Synonym: -
Host Gene: TRIM11
Genomic location(hg19): chr1:228581376-228594517:-
Genomic location(hg38): chr1:228393675-228406816:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissue; adjacent normal tissue

Cell lines:

HepG2; Hep3B; Huh7; HCCLM3; MHCC97L; LO2; HEK-293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: CDK4
Associated microRNA: miR-486
Biological function: hsa_circ_0016788 acts as an oncogenic circRNA in HCC; silencing hsa_circ_0016788 inhibits HCC cell proliferation and invasion, promotes apoptosis, and suppresses tumor growth in vivo.
Molecular mechanism: hsa_circ_0016788 functions through a miR-486/CDK4 regulatory pathway; miR-486 targets hsa_circ_0016788 and CDK4, and hsa_circ_0016788 silencing increases miR-486 expression and decreases CDK4 protein expression.
Biological pathway or process:

ceRNA regulation (other); proliferation (promotes); invasion (promotes); apoptosis (inhibits)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; RT-qPCR; Microarray; Clinical Sample Validation; Luciferase Reporter Assay; Transfection; CCK8; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; In Vivo Animal Model; ROC Analysis; Bioinformatics Analysis

Clinical significance:

hsa_circ_0016788 had high diagnostic efficiency for HCC patients with AUC 0.851 and acted as a biomarker for HCC detection.

Description:

hsa_circ_0016788 is up-regulated in HCC tissues and cell lines and functions as an oncogenic circRNA. Its knockdown suppresses proliferation, invasion, and xenograft tumor growth while promoting apoptosis, likely through the miR-486/CDK4 pathway. The study also suggests diagnostic potential for hsa_circ_0016788 in HCC, with ROC AUC of 0.851.

Confidence score:

0.817

Other information
Title:

Circular RNA hsa_circ_0016788 regulates hepatocellular carcinoma tumorigenesis through miR-486/CDK4 pathway.

Journal: Journal of cellular physiology
Published: 2018
PubMed ID: 29923236
Study type:

combined biological and clinical study

Data availability: -
Code availability: -