circRNA basic information
circBase ID: hsa_circ_0004516
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr12:110922882-110925748:+
Genomic location(hg38): chr12:110485077-110487943:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: breast cancer / BC
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

BC tissues; adjacent normal tissues / ANTs

Cell lines:

231-BR; MDA-MB-231

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: NSUN2, YBX1, AKT1
Associated microRNA: miR-1301-3p
Biological function: promotes proliferation; promotes migration; promotes invasion
Molecular mechanism: NSUN2-mediated m5C methylation enhances circRNA stability; YBX1 binds hsa_circ_0004516; hsa_circ_0004516 binds miR-1301-3p and relieves repression of AKT1, activating AKT signaling
Biological pathway or process:

PI3K/AKT (promotes); proliferation (promotes); migration (promotes); invasion (promotes); m5A modification (other); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; MeRIP / MeRIP-seq; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Actinomycin D / DRB Stability Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Western Blot; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

novel therapeutic target and biomarker for BCBM

Description:

hsa_circ_0004516 is upregulated in breast cancer brain metastasis and promotes 231-BR cell proliferation, migration, and invasion by activating AKT signaling. NSUN2-dependent m5C methylation increases its stability, with YBX1 binding as an m5C reader, and a ceRNA relationship is supported via miR-1301-3p targeting AKT1.

Confidence score:

0.7968

Other information
Title:

NSUN2-mediated m5C hypermethylation of hsa_circ_0004516 promotes breast cancer brain metastasis by activating AKT signaling.

Journal: Non-coding RNA research
Published: 2025
PubMed ID: 40990002
Study type:

combined biological and clinical study

Data availability: GSE246721
Code availability: -