circRNA basic information
circBase ID: hsa_circ_0008234
Name: hsa_circ_FOXP1
Synonym: circFOXP1 / circ-FOXP1
Host Gene: FOXP1
Genomic location(hg19): chr3:71090478-71102924:-
Genomic location(hg38): chr3:71041327-71053773:-
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; adjacent normal tissues; tumor tissues

Cell lines:

HGC-27; MKN-45; MKN-28; SGC-7901; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SOX4, ALKBH5
Associated microRNA: miR-338-3p
Biological function: promotes cell proliferation; promotes cell invasion; promotes cell cycle progression; promotes tumor growth
Molecular mechanism: ALKBH5-mediated m6A modification regulates circFOXP1; circFOXP1 sponges miR-338-3p to regulate SOX4 expression
Biological pathway or process:

proliferation (promotes); invasion (promotes); cell cycle (promotes); ceRNA regulation (promotes); m6A modification (other)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Survival Analysis; Transfection; CCK8; Cell Cycle Assay; Transwell Assay; In Vivo Animal Model; Luciferase Reporter Assay; RNA Pull-Down; RIP (RNA Immunoprecipitation); MeRIP / MeRIP-seq; Western Blot

Clinical significance:

High circFOXP1 expression was positively associated with tumor size, lymph node metastasis, TNM stage, and poor prognosis in patients with GC; higher circFOXP1 expression was an independent risk factor for DFS and OS

Description:

circFOXP1 is up-regulated in gastric cancer and its high expression correlates with aggressive clinicopathologic features and poor survival. Functionally, circFOXP1 promotes proliferation, invasion, and cell-cycle progression and enhances tumor growth in vivo. Mechanistically, ALKBH5-mediated m6A modification regulates circFOXP1, which acts as a ceRNA by sponging miR-338-3p to increase SOX4 expression.

Confidence score:

0.834

Other information
Title:

ALKBH5-mediated m6A modification of circFOXP1 promotes gastric cancer progression by regulating SOX4 expression and sponging miR-338-3p.

Journal: Communications biology
Published: 2024
PubMed ID: 38745044
Study type:

combined biological and clinical study

Data availability: Supplementary Data 1
Code availability: -