circRNA basic information
circBase ID: hsa_circ_0003945
Name: hsa_circ_UBAP2
Synonym: circUBAP2
Host Gene: UBAP2
Genomic location(hg19): chr9:33953282-33956144:-
Genomic location(hg38): chr9:33953284-33956146:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissue samples; HCC tissues; peri-tumor normal tissues; adjacent non-tumor tissues; healthy liver tissues

Cell lines:

MHCC97H; MHCC97L; HCCLM3; Huh-7; PLC/PRF/5; Hep-G2; Hep-3B; HEK-293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: AGO2, c-MYC
Associated microRNA: miR-1294
Biological function: Promotes HCC cell proliferation, DNA synthesis, migration, invasion, EMT and tumor growth, and inhibits apoptosis.
Molecular mechanism: circUBAP2 acts as a cytoplasmic miR-1294 sponge to upregulate c-MYC expression, thereby promoting HCC progression and EMT-related malignant phenotypes.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); EMT (promotes); ceRNA regulation (promotes); other pathway/process (promotes)

Detected method:
Q
M
Validation methods:

RT-qPCR; RNase R Treatment; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Annexin V/PI Flow Cytometry; Transwell Assay; Wound Healing Assay; In Vivo Animal Model; Western Blot; Cohort Study; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circUBAP2 expression is associated with worse OS and TTR after surgical resection and is an independent prognostic factor; patients with higher expression were more likely to have microvascular invasion and worse differentiation.

Description:

circUBAP2 (hsa_circ_0003945), derived from the human UBAP2 gene, is up-regulated in HCC tissues and high expression predicts poor OS and TTR. Functionally, it promotes proliferation, tumor growth, migration, invasion and EMT while inhibiting apoptosis. Mechanistically, cytoplasmic circUBAP2 sponges miR-1294 to increase c-MYC expression, forming a circUBAP2-miR-1294-c-MYC regulatory axis.

Confidence score:

0.8556

Other information
Title:

CircRNA UBAP2 serves as a sponge of miR-1294 to increase tumorigenesis in hepatocellular carcinoma through regulating c-Myc expression.

Journal: Carcinogenesis
Published: 2021
PubMed ID: 34314478
Study type:

combined biological and clinical study

Data availability: StarBase 2.0 (http://starbase.sysu.edu.cn); all data generated or analyzed during this study are included either in this article or in the Methods, Tables, Figures and Figure Legends files
Code availability: -