circRNA basic information
circBase ID: hsa_circ_0009061
Name: hsa_circ_KDM1A
Synonym: circKDM1A
Host Gene: KDM1A
Genomic location(hg19): chr1:23356961-23377013:+
Genomic location(hg38): chr1:23030468-23050520:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004986
MONDO name: urinary bladder carcinoma
Disease details: bladder cancer / BCa
Disease DO ID:
4007
Disease MeSH ID:
-
Disease NCIt ID:
C4912
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

BCa tissues; matched para-carcinoma tissues / paired adjacent tissue samples

Cell lines:

SV-HUC-1; T24; UMUC3; J82; RT-4; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: CPEB3, p53 mRNA
Associated microRNA: miR-889-3p
Biological function: Suppresses bladder cancer malignant proliferation and tumor growth; promotes apoptosis; induces G0/G1 arrest.
Molecular mechanism: Acts as a ceRNA sponge for miR-889-3p to regulate CPEB3, which stabilizes p53 mRNA via binding to the CPE signal in p53 3′UTR.
Biological pathway or process:

proliferation (inhibits); apoptosis (promotes); cell cycle (inhibits); ceRNA regulation (other); p53 signaling (promotes)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; divergent primers PCR; Sanger Sequencing; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Transfection; CCK8; Colony Formation Assay; EdU Staining; Cell Cycle Assay; Annexin V/PI Flow Cytometry; Western Blot; RNA Pull-Down; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; IHC (Immunohistochemistry); In Vivo Animal Model

Clinical significance:

Low circKDM1A expression is significantly associated with poor prognosis of BCa; circKDM1A may be a potential prognostic biomarker and therapeutic target of BCa.

Description:

circKDM1A (hsa_circ_0009061) is down-regulated in bladder cancer and acts as a tumor suppressor by inhibiting proliferation and tumor growth while promoting apoptosis. Mechanistically, it sponges miR-889-3p to relieve repression of CPEB3, and CPEB3 stabilizes p53 mRNA via binding the CPE signal in p53 3′UTR.

Confidence score:

0.8574

Other information
Title:

circKDM1A suppresses bladder cancer progression by sponging miR-889-3p/CPEB3 and stabilizing p53 mRNA.

Journal: iScience
Published: 2024
PubMed ID: 38632984
Study type:

combined biological and clinical study

Data availability: GEO: GSE92675
Code availability: -