circRNA basic information
circBase ID: hsa_circ_0049271
Name: hsa_circ_KEAP1
Synonym: circ_0049271 / circ _0049271
Host Gene: KEAP1
Genomic location(hg19): chr19:10610070-10610756:-
Genomic location(hg38): chr19:10499394-10500080:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009807
MONDO name: osteosarcoma
Disease details: osteosarcoma / OS
Disease DO ID:
3347
Disease MeSH ID:
D012516
Disease NCIt ID:
C9145
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; matched normal tissues

Cell lines:

HOS; Saos-2; SW1353; hFOB 1.19

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: PTRF, Ago2
Associated microRNA: miR-1197
Biological function: Suppresses osteosarcoma cell proliferation and invasion and inhibits tumor growth in vivo (tumor-suppressive).
Molecular mechanism: Acts as a competing endogenous RNA (ceRNA) by sponging miR-1197, thereby relieving miR-1197-mediated repression of PTRF.
Biological pathway or process:

proliferation (inhibits); invasion (inhibits); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Western Blot; In Vivo Animal Model; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

-

Description:

circ_0049271 is down-regulated in osteosarcoma tissues and cell lines and mainly localized in the cytoplasm. It suppresses OS cell proliferation and invasion and inhibits xenograft tumor growth by acting as a ceRNA that sponges miR-1197 to restore PTRF expression (circ_0049271/miR-1197/PTRF axis).

Confidence score:

0.7795

Other information
Title:

Circ_0049271 targets the miR-1197/PTRF axis to attenuate the malignancy of osteosarcoma.

Journal: Cancer biomarkers : section A of Disease markers
Published: 2024
PubMed ID: 38578882
Study type:

combined biological and clinical study

Data availability: GSE12865
Code availability: -