circRNA basic information
circBase ID: hsa_circ_0007909
Name: hsa_circ_ATXN1
Synonym: circATXN1
Host Gene: ATXN1
Genomic location(hg19): chr6:16586010-16753578:-
Genomic location(hg38): chr6:16585779-16753347:-
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0011385
MONDO name: intervertebral disk degenerative disorder
Disease details: intervertebral disc degeneration / IDD
Disease DO ID:
90
Disease MeSH ID:
D055959
Disease NCIt ID:
C26983
Disease ICD11 ID:
-
Disease OMIM ID:
603932
Species: Human
Species details: Homo sapiens
Tissue specimen:

nucleus pulposus tissue

Cell lines:

-

In vivo animal model:

genetically engineered animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: heterogeneous nuclear ribonucleoprotein A2B1, HNRNPA2B1, progerin, insulin-like growth factor 1 receptor, IGF-1R, IGF-1Rbeta, pre-ATXN1
Associated microRNA: -
Biological function: Promotes cellular senescence/aging of nucleus pulposus cells, disrupts extracellular matrix organization, and inhibits mitochondrial respiration; circATXN1 silencing rejuvenates aging hNPCs and delays IVDD in vivo.
Molecular mechanism: HNRNPA2B1-mediated splicing circularization regulates circATXN1 formation (linked to m6A in pre-ATXN1 intron 5); circATXN1 binds progerin and promotes its translocation from nucleus to cytoplasm, leading to reduced IGF-1Rbeta expression/signaling and promoting senescence/IVDD.
Biological pathway or process:

proliferation (inhibits); mitochondrial function (inhibits); ceRNA regulation (inhibits); ECM (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; Agarose gel electrophoresis; FISH / smFISH; RIP (RNA Immunoprecipitation); RNA Pull-Down; Western Blot; Transfection; CCK8; Flow Cytometry(Non-apoptosis/cycle); In Vivo Animal Model; H&E Staining

Clinical significance:

CircATXN1 was enriched in the nucleus pulposus tissues of IVDD patients.

Description:

circATXN1 (hsa_circ_0007909) is up-regulated in aging human nucleus pulposus cells/tissues in IVDD and promotes senescence, ECM disruption, and impaired mitochondrial respiration. It is regulated by HNRNPA2B1-associated circularization and binds progerin to drive its nucleus-to-cytoplasm translocation, suppressing IGF-1Rbeta signaling. Silencing circATXN1 via an siRNA-loaded DNA tetrahedron nanogel reverses aging phenotypes in hNPCs and alleviates IVDD in zmpste24-/- mice.

Confidence score:

0.7846

Other information
Title:

Silencing circATXN1 in Aging Nucleus Pulposus Cell Alleviates Intervertebral Disc Degeneration via Correcting Progerin Mislocalization.

Journal: Research (Washington, D.C.)
Published: 2024
PubMed ID: 38533181
Study type:

combined biological and clinical study

Data availability: GEO
Code availability: -