circRNA basic information
circBase ID: hsa_circ_0006988
Name: hsa_circ_LDLRAD3
Synonym: circ_0006988
Host Gene: LDLRAD3
Genomic location(hg19): chr11:36248634-36248980:+
Genomic location(hg38): chr11:36227084-36227430:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; adjacent normal tissues; transplanted tumors

Cell lines:

HGC-27; AGS; SNU-16; MKN-45; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: TFAP4, Ago2
Associated microRNA: miR-92a-2-5p
Biological function: promotes gastric cancer cell proliferation, migration, invasion and tumor growth in vivo
Molecular mechanism: circ_0006988 acts as a sponge for miRNA-92a-2-5p and upregulates TFAP4 expression, promoting malignant progression of gastric cancer
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); ceRNA regulation (promotes); other pathway/process (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Transfection; CCK8; Transwell Assay; Wound Healing Assay; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

circ_0006988 is promising to be a target for GC treatment

Description:

circ_0006988 is up-regulated in gastric cancer tissues and cell lines. It promotes GC cell proliferation, migration, invasion and xenograft tumor growth by sponging miRNA-92a-2-5p and increasing TFAP4 expression, suggesting a potential therapeutic target role in GC.

Confidence score:

0.7756

Other information
Title:

circ_0006988 promotes gastric cancer cell proliferation, migration and invasion through miRNA-92a-2-5p/TFAP4 axis.

Journal: Epigenomics
Published: 2024
PubMed ID: 39400106
Study type:

combined biological and clinical study

Data availability: The data and materials in the current study are available from the corresponding author on reasonable request.
Code availability: -