circRNA basic information
circBase ID: hsa_circ_0004870
Name: hsa_circ_RBM39
Synonym: -
Host Gene: RBM39
Genomic location(hg19): chr20:34302106-34313077:-
Genomic location(hg38): chr20:35714184-35725155:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008315
MONDO name: prostate cancer
Disease details: prostate cancer
Disease DO ID:
10283
Disease MeSH ID:
D011471
Disease NCIt ID:
C7378
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

LNCaP; BPH1; 22Rv1; DU145

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: RBM39, U2AF65, AR-V7
Associated microRNA: miR-145
Biological function: potentially associated with development of enzalutamide resistance; potentially linked to splicing regulation via RBM39/U2AF65 and AR-V7 regulation
Molecular mechanism: Predicted circRNA-miRNA binding (miR-145); association with RBM39/U2AF65 splicing-related pathway and AR-V7 regulation (correlative).
Biological pathway or process:

ceRNA regulation (other); other pathway/process (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; RNase R Treatment; Bioinformatics Analysis

Clinical significance:

Potential biomarker relevance is suggested (detectable differences by malignancy status and androgen dependency in cell lines), but no patient outcome/diagnostic performance is reported.

Description:

hsa_circ_0004870 (host gene RBM39) is down-regulated in enzalutamide-resistant LNCaP clones and is also lower in malignant and AR-positive contexts in prostate-related cell lines. The study links its deregulation to drug resistance, potentially through RBM39/U2AF65 splicing-related biology and AR-V7 regulation, and predicts miR-145 binding.

Confidence score:

0.3858

Other information
Title:

Circular RNAs are differentially expressed in prostate cancer and are potentially associated with resistance to enzalutamide.

Journal: Scientific reports
Published: 2019
PubMed ID: 31341219
Study type:

biological research

Data availability: GSE118959
Code availability: -