circRNA basic information
circBase ID: hsa_circ_0001649
Name: hsa_circ_SHPRH
Synonym: -
Host Gene: SHPRH
Genomic location(hg19): chr6:146209155-146216113:-
Genomic location(hg38): chr6:145888019-145894977:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008380
MONDO name: retinoblastoma
Disease details: retinoblastoma / RB
Disease DO ID:
768
Disease MeSH ID:
D012175
Disease NCIt ID:
C7541
Disease ICD11 ID:
1855353671
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

RB tissues; normal retina samples; xenograft tumor tissues

Cell lines:

SO-Rb50; HXO-RB44; ARPE-19; WERI-Rb1; Y79

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: p-AKT, p-mTOR, AKT, mTOR, Bcl-2, Bax, caspase-3, caspase-9
Associated microRNA: -
Biological function: hsa_circ_0001649 inhibits RB cell growth and proliferation, promotes cell apoptosis, suppresses xenograft tumor growth, and acts as a tumor suppressor in RB.
Molecular mechanism: hsa_circ_0001649 regulates RB cell proliferation and apoptosis partly through negative regulation of AKT/mTOR signaling, with altered p-AKT and p-mTOR expression and apoptosis-related proteins Bcl-2, Bax, caspase-3 and caspase-9.
Biological pathway or process:

PI3K/AKT/mTOR (inhibits); apoptosis (promotes); proliferation (inhibits); other pathway/process (inhibits)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); Cohort Study; Survival Analysis

Clinical significance:

Downregulation of hsa_circ_0001649 is associated with larger tumor size and advanced IIRC stage, predicts worse 5-year overall survival, and hsa_circ_0001649 may be a prognostic biomarker and therapeutic target for RB.

Description:

hsa_circ_0001649 is downregulated in retinoblastoma tissues and cell lines, and reduced expression is associated with aggressive clinicopathologic features and poor overall survival. Functionally, hsa_circ_0001649 suppresses RB cell proliferation and xenograft growth while promoting apoptosis, partly through inhibition of AKT/mTOR signaling.

Confidence score:

0.6736

Other information
Title:

Downregulation of circular RNA hsa_circ_0001649 indicates poor prognosis for retinoblastoma and regulates cell proliferation and apoptosis via AKT/mTOR signaling pathway.

Journal: Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie
Published: 2018
PubMed ID: 29864621
Study type:

combined biological and clinical study

Data availability: -
Code availability: -