circRNA basic information
circBase ID: -
Name: mmu_circ_Cdr1
Synonym: Cdr1as / Cdrlas
Host Gene: Cdr1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005292
MONDO name: colitis
Disease details: colitis
Disease DO ID:
0060180
Disease MeSH ID:
D003092
Disease NCIt ID:
C26723
Disease ICD11 ID:
1870792958
Disease OMIM ID:
-
Species: Mouse
Species details: Mus musculus
Tissue specimen:

mouse intestinal mucosa; colon mucosa; small intestinal mucosa; human intestinal mucosa; colonic mucosa; ileal mucosa

Cell lines:

Caco-2

In vivo animal model:

other disease animal model; genetically engineered animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: Dicer, TRBP
Associated microRNA: miR-195
Biological function: inhibits proliferation and delays injury-induced regeneration/repair of the intestinal epithelium; protects mucosa against colitis when deleted
Molecular mechanism: modulates miR-195 (Cdr1as/miR-195 axis) by stabilizing pre-miR-195 and affecting miRNA biogenesis/processing (Dicer/TRBP), thereby regulating epithelial repair and organoid growth
Biological pathway or process:

proliferation (inhibits); migration (inhibits); apoptosis (other); ceRNA regulation (other)

Detected method:
Q
H
Validation methods:

RNase R Treatment; RT-qPCR; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Microarray; Transfection; Actinomycin D / DRB Stability Assay; BrdU; TUNEL; In Vivo Animal Model; H&E Staining; Western Blot; IF (Immunofluorescence)

Clinical significance:

Cdr1as is increased in human intestinal mucosa from patients with UC, CD, and sepsis and is associated with mucosal injury/erosions, inflammation, and delayed healing

Description:

Cdr1as is induced in injured/inflamed intestinal mucosa (mouse colitis/septic stress and human IBD/sepsis) and acts as a negative regulator of intestinal epithelial proliferation and wound repair. Mechanistically, it regulates the Cdr1as/miR-195 axis by affecting miR-195 biogenesis and stabilizing pre-miR-195, thereby impairing epithelial repair and organoid growth; genetic deletion of Cdr1as improves regeneration and protects against colitis.

Confidence score:

0.6566

Other information
Title:

Circular RNA Cdr1as inhibits proliferation and delays injury-induced regeneration of the intestinal epithelium.

Journal: JCI insight
Published: 2024
PubMed ID: 38227372
Study type:

combined biological and clinical study

Data availability: GSE250489
Code availability: -