circRNA basic information
circBase ID: -
Name: hsa_circ_TNFRSF21
Synonym: circTNFRSF21
Host Gene: TNFRSF21
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0018076
MONDO name: tuberculosis
Disease details: tuberculosis / TB
Disease DO ID:
399
Disease MeSH ID:
D014376
Disease NCIt ID:
C3423
Disease ICD11 ID:
2072728114
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

THP-1

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: MYD88
Associated microRNA: miR-6721-5p
Biological function: potential roles in the pathogenesis of tuberculosis and anti-TB defense of host cells
Molecular mechanism: ceRNA mechanism (circRNA-miRNA-mRNA network) predicted
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

circRNA-seq; Sanger Sequencing; divergent primers PCR; RNase R Treatment; Back-Splice Junction PCR / divergent primers PCR; RT-qPCR; Nuclear-Cytoplasmic Fractionation; Bioinformatics Analysis

Clinical significance:

potential diagnostic markers and therapeutic targets for mycobacterium infection

Description:

circTNFRSF21 is down-regulated in M.tb-infected THP-1 macrophages and is mainly localized in the cytoplasm. The study predicts a ceRNA axis circTNFRSF21/miR-6721-5p/MYD88 that may be associated with M.tb infection.

Confidence score:

0.5439

Other information
Title:

Identification of Differential Circular RNA Expression Profiles and Functional Networks in Human Macrophages Induced by Virulent and Avirulent Mycobacterium tuberculosis Strains.

Journal: International journal of molecular sciences
Published: 2023
PubMed ID: 38139387
Study type:

biological research

Data availability: GSE 248244
Code availability: -